uh-joan-pubmed-mcp-server

An MCP server package that provides PubMed-related capabilities to an agent via the Model Context Protocol. It is intended to let an AI agent query and retrieve PubMed article data as part of a tool-using workflow.

Evaluated Apr 04, 2026 (17d ago)
Homepage ↗ Repo ↗ Ai Ml mcp pubmed literature-search biomedical retrieval agent-tools
⚙ Agent Friendliness
49
/ 100
Can an agent use this?
🔒 Security
38
/ 100
Is it safe for agents?
⚡ Reliability
25
/ 100
Does it work consistently?

Score Breakdown

⚙ Agent Friendliness

MCP Quality
55
Documentation
45
Error Messages
0
Auth Simplicity
90
Rate Limits
20

🔒 Security

TLS Enforcement
60
Auth Strength
25
Scope Granularity
15
Dep. Hygiene
45
Secret Handling
50

No code/README details were provided here to verify TLS, auth, scope enforcement, dependency health, or secret handling. Treat as unverified. Since the service likely makes outbound requests to PubMed, ensure SSRF protections if any URL/endpoint inputs are accepted.

⚡ Reliability

Uptime/SLA
0
Version Stability
40
Breaking Changes
30
Error Recovery
30
AF Security Reliability

Best When

When you want an AI agent to perform structured literature discovery and fetch PubMed content through MCP tools.

Avoid When

When you need high-volume throughput, strict rate-limit compliance guarantees, or you cannot tolerate potential failures from external PubMed/network dependencies.

Use Cases

  • Agent-assisted literature search over PubMed
  • Retrieval of PubMed metadata (e.g., titles/authors/abstracts) for summarization
  • Evidence gathering for research or systematic review support
  • Quick discovery of biomedical articles by query terms

Not For

  • Running as a general-purpose PubMed scraper outside an agent/tool workflow
  • Production workloads that require strict guarantees about PubMed response accuracy or latency without verification
  • Use cases requiring authenticated access to restricted biomedical datasets

Interface

REST API
No
GraphQL
No
gRPC
No
MCP Server
Yes
SDK
No
Webhooks
No

Authentication

OAuth: No Scopes: No

Auth details are not provided in the supplied content. Many MCP servers either use no auth (local) or rely on the MCP host’s authentication; this cannot be confirmed here.

Pricing

Free tier: No
Requires CC: No

Agent Metadata

Pagination
unknown
Idempotent
False
Retry Guidance
Not documented

Known Gotchas

  • PubMed lookups may fail due to network timeouts or upstream rate limiting; ensure the agent can handle transient failures.
  • If the MCP server exposes free-text search, the agent may need to sanitize/limit queries to avoid excessively broad searches.
  • If pagination (PMID lists, result sets) is not clearly defined, the agent may miss results or loop while paging.

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Scores are editorial opinions as of 2026-04-04.

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