mcp-server-pubtator3

This project provides an async Python server for interacting with the [PubTator3 API](https://www.ncbi.nlm.nih.gov/research/pubtator3-api/). It exposes multiple biomedical text-mining tools compatible with the MCP agent protocol, supporting tasks such as entity lookup, biomedical literature search, and text extraction from PubMed/PMC articles.

Evaluated Mar 18, 2026 (0d ago)
Homepage ↗ Repo ↗ Databases
⚙ Agent Friendliness
60
/ 100
Can an agent use this?
🔒 Security
49
/ 100
Is it safe for agents?
⚡ Reliability
48
/ 100
Does it work consistently?

Score Breakdown

⚙ Agent Friendliness

MCP Quality
--
Documentation
--
Error Messages
--
Auth Simplicity
20
Rate Limits
75

🔒 Security

TLS Enforcement
70
Auth Strength
30
Scope Granularity
50
Dep. Hygiene
50
Secret Handling
50

⚡ Reliability

Uptime/SLA
40
Version Stability
60
Breaking Changes
50
Error Recovery
40
AF Security Reliability

Interface

REST API
Yes
GraphQL
No
gRPC
No
MCP Server
Yes
SDK
No
Webhooks
No

Authentication

OAuth: No Scopes: No

Pricing

Model: free
Free tier: Yes
Requires CC: No

Agent Metadata

Idempotent
Unknown
Retry Guidance
Not documented

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Scores are editorial opinions as of 2026-03-18.

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