{"id":"grll-pubmedmcp","name":"pubmedmcp","homepage":null,"repo_url":"https://github.com/grll/pubmedmcp","category":"ai-ml","subcategories":[],"tags":["mcp","pubmed","biomedical-search","literature-mining","python"],"what_it_does":"pubmedmcp is a Python MCP server that provides tools for searching and fetching biomedical articles from PubMed, delegating the actual PubMed operations to the pubmedclient library.","use_cases":["Biomedical literature search for research assistants","Retrieving PubMed records by query for downstream summarization","Building agent workflows that need structured PubMed citations/metadata","On-demand lookup of article metadata in clinical/biomedical projects"],"not_for":["User authentication/authorization use cases","High-volume bulk downloading without rate-limit awareness","Applications requiring a REST/GraphQL/SDK-first integration model","Sensitive data processing environments that require strict audit-ready error handling/guarantees"],"best_when":"You want an MCP-compatible tool for PubMed search/fetch that can be called from an AI agent.","avoid_when":"You require a documented public REST/GraphQL API, fine-grained access controls, or clearly specified retry/idempotency semantics.","alternatives":["Direct use of pubmedclient in your own code","NCBI E-utilities via scripted calls (if appropriate for your workflow)","General bibliographic APIs or datasets that provide higher-level indexing"],"af_score":43.8,"security_score":46.2,"reliability_score":32.5,"package_type":"mcp_server","discovery_source":["github"],"priority":"high","status":"evaluated","version_evaluated":null,"last_evaluated":"2026-03-30T13:46:35.009789+00:00","interface":{"has_rest_api":false,"has_graphql":false,"has_grpc":false,"has_mcp_server":true,"mcp_server_url":null,"has_sdk":false,"sdk_languages":[],"openapi_spec_url":null,"webhooks":false},"auth":{"methods":[],"oauth":false,"scopes":false,"notes":"No authentication mechanism is described in the provided README/manifest snippet."},"pricing":{"model":null,"free_tier_exists":false,"free_tier_limits":null,"paid_tiers":[],"requires_credit_card":false,"estimated_workload_costs":null,"notes":"No pricing information provided (appears to be an open-source/self-hostable component)."},"requirements":{"requires_signup":false,"requires_credit_card":false,"domain_verification":false,"data_residency":[],"compliance":[],"min_contract":null},"agent_readiness":{"af_score":43.8,"security_score":46.2,"reliability_score":32.5,"mcp_server_quality":45.0,"documentation_accuracy":40.0,"error_message_quality":0.0,"error_message_notes":null,"auth_complexity":100.0,"rate_limit_clarity":10.0,"tls_enforcement":70.0,"auth_strength":40.0,"scope_granularity":0.0,"dependency_hygiene":55.0,"secret_handling":70.0,"security_notes":"No auth model is described; if the MCP server makes outbound calls to PubMed/NCBI, security depends on transport (likely HTTPS) and on how the server is deployed. No information is provided about logging practices, secret handling, or how requests are validated.","uptime_documented":0.0,"version_stability":50.0,"breaking_changes_history":50.0,"error_recovery":30.0,"idempotency_support":"false","idempotency_notes":null,"pagination_style":"none","retry_guidance_documented":false,"known_agent_gotchas":["README only shows how to launch the MCP server; it does not document available MCP tools, parameters, or output schemas.","pubmedclient/NCBI endpoints may impose rate limits; retry/pagination behavior is not documented here."]}}