{"id":"biomcp","name":"BioMCP","homepage":"https://github.com/genomoncology/biomcp","repo_url":"https://github.com/genomoncology/biomcp","category":"science","subcategories":["biomedical","mcp-server","research"],"tags":["biomedical","bioinformatics","mcp-server","pubmed","clinicaltrials","genomics","drug-discovery","rust","open-source"],"what_it_does":"A single-binary CLI and MCP server that provides unified natural language and structured access to 15+ biomedical databases (PubMed, ClinicalTrials.gov, ChEMBL, UniProt, etc.) across 12 entity types including genes, variants, drugs, and clinical trials.","use_cases":["Querying biomedical literature, clinical trials, and drug databases from an AI assistant like Claude Desktop","Running gene-set enrichment analysis and cross-entity pivots (e.g., finding trials for a specific genetic variant)","Conducting guided biomedical investigations using 14 built-in workflow 'skills' for specialized research tasks"],"not_for":["Real-time clinical decision support in patient care settings — this is a research tool, not a medical device","Teams needing proprietary or licensed database access (most sources are public APIs)","High-volume programmatic pipelines where a REST API would be more appropriate than MCP"],"best_when":"A biomedical researcher or AI assistant needs to cross-query multiple public databases (genes, variants, drugs, trials, literature) in a single unified interface.","avoid_when":"You need real-time, clinically validated data or access to proprietary databases not covered by the integrated public sources.","alternatives":["pubmed-mcp","ncbi-datasets","chembl-api"],"af_score":78.1,"security_score":75.0,"reliability_score":null,"package_type":"mcp_server","discovery_source":["github","github_awesome"],"priority":"low","status":"evaluated","version_evaluated":"latest","last_evaluated":"2026-03-01T09:50:05.325739+00:00","performance":{"latency_p50_ms":null,"latency_p99_ms":null,"uptime_sla_percent":null,"rate_limits":null,"data_source":"llm_estimated","measured_on":null}}